Nature

Reproducible annotation of T cell subsets and activation states with gene expression programs

We created T-CellAnnoTator (TCAT), a computational method that helps to identify T cell subsets, activation states and functions. It does this using reproducible gene expression programs found across ...
Nature

FANTASIA leverages language models to decode the functional dark proteome across the animal tree of life

Protein functional annotation is crucial in biology, but many protein-coding genes remain uncharacterized, especially in non-model organisms. FANTASIA (Functional ANnoTAtion based on embedding space ...